Software

MIRACL

Multi-modal Image Registration And Connectivity anaLysis

Our general purpose pipeline for registration, segmentation, tract tracing & connectivity analyses in animal models

Check on github

HippMapp3r

Our CNN-based segmentation technique of the whole hippocampus from MRI

Check on github

ROOD-MRI

Robustness of deep learning segmentation models to Out-Of-Distribution data in MRI

Our DL benchmarking platform to OOD data in MRI

Check on github

HyperMapp3r

Our Bayesian CNN for White Matter Hyperintensities segmentation and uncertainty estimation

Check on github

icvMapp3r

Our Unet for robust whole brain segmentation / skull-stripping

Check on github

VentMapp3r

Our Unet for robust ventricular segmentation

Check on github

Mitorch (under construction)

Medical Imaging in PyTorch

Our Pytorch-based DL library

Check on github